HHalign

Input

Enter query alignment
or upload a local file
Select input format
 
 

Options

Enter target alignment
or upload a local file
Select input format of target alignment
 
Max. pairwise sequence identity
 
Min. sequence identity with query
 
Half-length of averaging window for dotplot
 
score threshold for dotplot
 
Score secondary structure
Other advanced options
 
 

Job Options

Job-ID
 (leave empty for automatic creation)
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