HHomp - Homology detection of OMPs by HMM-HMM comparison

Input

Paste protein sequence or multiple alignment
or upload a local file
Select input format
 
Examples
OmpA paste/results   YadA paste/results  

Search Options

Select HMM databases
Max. PSI-BLAST iterations
E-value threshold for PSI-BLAST
Min. coverage of PSI-BLAST hits
Min. sequence identity of PSI-BLAST hits with query
Score beta-barrel structure
 yes  no 
Alignment mode
 local  global 
 

Output options

Show sequences per HMM
Width of alignments
 columns
Min. probability in hitlist
 %
Max. number of hits in hitlist
 
 

Job Options

Job-ID
 (leave empty for automatic creation)
Send notification to (optional)
 
 
 
Please send feedback to: remmert AT lmb.uni-muenchen.de