HHsenser - exhaustive intermediate profile search using HMM-HMM comparison

Input

Paste protein sequence or multiple alignment (up to 500 residues)
or upload a local file
Select input format
 
Examples
AbrB paste/results   P5/Phi-6 paste/results  
 

Options

Select database
Number of residues by which seeds are extended on either side
PSI-BLAST Evalue threshold
Min. coverage of PSI-BLAST hits
Use clustered database (recommended)
Terminate search when this many sequences found
Prescreen sequence for structural domains
 

Job Options

Job-ID
 (leave empty for automatic creation)
Send notification to (optional)
 

 
Reference: Söding J, Remmert M, Biegert A, and Lupas A. HHsenser: exhaustive transitive profile search using HMM-HMM comparison. Nucleic Acids Res. 34, W374-378. (download pdf)
 
 
Please send feedback to: soeding AT lmb.uni-muenchen.de