HHsenser - exhaustive intermediate profile search using HMM-HMM comparison

or upload a local file
Select input format
 
Examples
AbrB paste/results   P5/Phi-6 paste/results  
(Example results have been precomputed at some time. They most probably are not identical to results of a new computation with actualized databases.)
 
Select database
PSI-BLAST Evalue threshold
Min. coverage of PSI-BLAST hits
Match state assignment
(For A2M/A3M format the match assignment of the input is used.)
 
Job-ID
 (leave empty for automatic creation)
Send notification to (optional)
 

 
Reference: Söding J, Remmert M, Biegert A, and Lupas A. HHsenser: exhaustive transitive profile search using HMM-HMM comparison. Nucleic Acids Res. 34, W374-378. (download pdf)
 
 
Please send feedback to: soeding AT mpibpc.mpg.de