Hhsenser - Results      Job-ID: tu_AbrB      Date: 15:25 on Oct 22 2009

alignment with 100 most distinct sequences                  reduced alignment: 100 most distinct sequences with inserted residues deleted
 
Download alignment files:
tu_AbrB_strict_masterslave.clu CLUSTAL formatted without inserts
tu_AbrB_strict_masterslave.fas FASTA formatted without inserts
tu_AbrB_strict_masterslave.reduced.fas FASTA formatted without inserts (with 100 most distinct sequences)
tu_AbrB_strict.clu CLUSTAL formatted
tu_AbrB_strict.a3m A3M formatted
tu_AbrB_strict.fas FASTA formatted
tu_AbrB_strict.reduced.fas FASTA formatted (with 100 most distinct sequences)

Master-slave alignment of 100 most distinct sequences:
CLUSTAL ss_pred CCCCCCCEEEEECCCCCEEEEHHHHHHCCCCCCCCEEEEEECCEEEEEEECCCCEEEEEEEECHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHCC ss_conf 964344448876378979862999986599989948999809989999606998138997386466654399799899999999999999986369 gi|113009|sp|P0887 MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEGAEQIISEIQNQLQNLK gi|228950262|ref|Z ---KSTGIARKIDHLGRVVIPIELRRVLEIVEGDPVEVFVNKDEIVLRKYRVSNACAVTGEISYDNISLAGGKVILSPKALKGIAKEMK------- gi|150017133|ref|Y --MKASGIVRNLDNLGRVVIPKEIRKVLGINEGDSIEITKVNNDIVLRKYSKGCIFCGSDKDISEFNNVLVCSGCRKILGQN-------------- gi|228985128|ref|Z --MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAKYLIKEIEKFLNKSE gi|228904590|ref|Z MLMKATGIVRKVDNLGRIVIPKETRKTLQVETSDTLEFFVEEDAIVLQKYTPHGTCPITGEISSTNVKLVGGKLTLSPEGLKQLLAELEQY----- gi|206975211|ref|Z --MKNTGVARKVDELGRVVIPVELRRTLGIAEGTALNFHVDGENIVLRKHEK--SCFVTGEVSESNMELLGGRMFLSKAGANELLNALEKSVK--- gi|56963047|ref|YP --MKATGIVRKVDQLGRIVVPKELRKTMGIDIGSPLEIYVEDDRVIVRKYEPSIKTCMVTGESSEEHLELANGNVVLSQEAAKQLLDELKQ----- gi|251779475|ref|Z --MKSTGIVRKMDELGRLVIPMELRRNLNIAEKDALEIYVEGDNIILKKYTPG--CFICQEI-DNLVVIPDTNVSICPKCLAKIID---------- gi|160931573|ref|Z --MTSTGIVRRIDGLGRIVLPKELRATLDLNDRDPLEIYTEGNTIILKKYEP--ACIFC-NSTKEVINYRGRNI--CKACIDRLKKDI-------- gi|150018203|ref|Y --MRATGMVRKVDELGRVVIPKETRKLLSINEKDSLEIFEEEKKIILKKYAPG--CIFCGNI----KSVTKFKEV---AICEECIKELKK------ gi|218289663|ref|Z --MLVTGYVRKVDHLGRLVIPKRLRKDLAIAQNDLIEIYVEGDTVVLSKYEPK--CVFCGEKAE--------KIFHERAVCGACLEELK------- gi|258514527|ref|Y --MKATGVVRRIDDLGRVVIPKEIRRTLRINNADPLEVFVDGKKVILKKYEPIQDLSKYAKEYAASLFESLGRKT--------------------- gi|167765641|ref|Z --MKATGIIRRIDDLGRIVIPKEIRKTMHIRESDPLEIFTERDDIILKKYSPIGELGNSAKLYAESIAAQIPHTI--------------------- gi|139954754|gb|EC ----SKGNISKIDNLGRVVIPKSIRKALNIEHNDQISMYVEGENLVISK--GYQICGIC---ESKNIKFQLGKKFL----CSKCIEEIKN------ gi|52081945|ref|YP --MKNTGIVRRIDELGRVVLPVEMRRVLNINEKDPLEIYTDGENIILTKYAANMACLMTGDITTKNKTYAGGKIVLSPRGAEMLLEDMMAALSEKK gi|255023311|ref|Z --MKSTGMVRKMDELGRVVIPIEIRRTMNLNVKDPLEIFTDEDTIVLKKFSSGLVCDITGEFSVDNKKFVDGKLTLSKEGAAELMAEIKRRF---- gi|167461808|ref|Z --MKSTGIVRKVDELGRIVIPKELRTTLSIEERDGLEIFVDQERVILKKYAP--ACLFCN--SGEETVYFKGKLI-CHSCLTEMVEQQKEPAQTI- gi|160881120|ref|Y --MKNTGIVRHIDGLGRIVLPMEMRKLQDIKEGDPLEIYVDYDSIVLKKHQDECTCRVCGQKLGKEKRMVTLNDITLCTECIKWFNDEI------- gi|251778260|ref|Z --MKSIGIVRKVDSLGRVVIPMELRKTLEIKGADHGEGTPLEIFVEGSDIILRKYSTGG-CHCCGSM-DKLVEVMGLKI--CPKCLEEL------- gi|157691127|ref|Y --------VRYIDNVGRVVLPTDIRKRLKIHPRDFMEIYREEDQIVIKPYWQDKPCIVTGEVTGSNKVLSGG-VVISPEG---------------- gi|160940655|ref|Z -IMN-SGMIRRIDDLGRIVIPKEIRKNLHIQDGEPLEI-NVMDSIMLTPYSPLPALSIQSDLFLRVMAKELKTGT--------------------- gi|143920276|gb|ED ----------KIDNLGRVVIPKTIREALDIKHNDEISMTVQNGTLIISK--GYKACSICN--SKEVSTQLGDKLL-----CETCISEIK------- gi|75761713|ref|ZP -FMKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPEGTELLIKKLQQYLLK-- gi|225175939|ref|Z --MKSTGIVRKVDELGRIVIPIELRRVLNIDIKDSLEIFVEGEKIILRKYQP----ACVFCENAEDVHQHKGRMV-----CHECAKEISHK----- gi|182420045|ref|Z --MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFTDRDGGVILKKYSPIEELTDFSKEYCESLQQVIGHIVLICDKDAFVSVSGATKKEYL gi|15896882|ref|NP --MNSIGIVRKVDELGRIVIPKETRSQLNVNEGDSLEIFIDEVESHIVLRKYAPG--CTFCNSLSD--ITYFKGVRV-----CKHCKEELQDTVK- gi|83589541|ref|YP MLM-STQLVR-LTSKGQMTIPQSVRETLGLKAGDYLTILVDEDEIRLRKVQP-------------------------------------------- gi|124027126|ref|Y --MSSSGATIVR-VDGKGRVTLPLEVRRRLGLREWSKLRLFIDEESKRIIL--------------------------------------------- gi|258516093|ref|Y --MKSTGIVRKVDELGRVVLPVELRRSMGIAEKDPIEILVDGELIVLRKYVPC--CVFCG--SSDGTQTFNKKIV-CQQCATEIFENTK------- gi|154497710|ref|Z --MKATGIVRRIDDLGRVVIPKEIRRTMRIREGDPLEIYTDKDGGVIFKKYSLMGGLGDFAGQMCETLNKTTGEIAVITDRDSCIAVAGTARRELA gi|228962769|ref|Z -------MVRRMDELGRVVLPKEMRRSLDLVTNTQVEMFVRDGNVHMRKQE--RTCFVTGESTENHLELYDGRLILSQEGAQDLLTTLQK------ gi|223983660|ref|Z --MKATGIVRRLDDLGRLVIPKEIRKIYKLKEGDSIEFFVNEDSEIVLKKFSVLSDETESITRMCQTLQEVTEHPVLFVEDDQILCVGQAKL---- gi|167745595|ref|Z --MKCTGVVRKLDELGRITLPIELRRNLGVGDKDPLEIFVDEDTILLKKYQPAD--IFTGEM-EDLIDYKGKK--VSRESVLKLAE---------- gi|208701914|ref|Y -------LLKKIDHTGRITLPKDLCGKFGLKKDDQVEITHDEQFIKIRKHQPEFVCAVTGKITDQGQTI--GNAFISYEGIEQILQEQEHLKEKEK gi|148747759|ref|Y --MKPLGIVRRIDHLGRITIPMEVRRVHGWDTGTPIEMFATDKGLVLREYGAEQKKLA---IIEELKYLAD---TVTDETALAMIEDIMEYVKG-- gi|10956352|ref|NP --------------------------------KNPIQIFVQHEKIILQKSKSYDACTITADISEKIIPLANRQIVLSSDGIELLIKEIQQHLVK-- gi|253575928|ref|Z --MRRRGIVRALDELGRIVLPIEWRRVLDIEEKDPMEFFIDPDSIMIRKYQSQ---ACMFCQTLDNLLYYHEKFI-----CPSCIQELRLQ----- gi|225175565|ref|Z ----------KITSKGQITLPKQHRDQLMLREGDYLNVYIDNDSIVLKPESNKSEKEAIYEYCRKHGSKNTDLAEARRILAK-------------- gi|194015747|ref|Z --MKRTGMVRHIDSLGRIVLPSEMRKVLNIKEEQLLEIFIEDQTIMLKKYDADKSCLLTGQVTKYNKSYGNGKVMLSPEGAERLLVELKQLLK--- gi|225199410|ref|Z ----------KVFNKGQVVIPVEIRKALDIKPGDSIEVNFDHERRLIQLRKPDKNESRVLAGSLA----AYAKGKQFPSRSGMHEALKQ------- gi|239627831|ref|Z --------YKRITSKGGVNIPVKLRRSMGMEPRDAIELEVDRNELVIRAYQA--RCIYCGSG--EIHLKKNGKGV-CRACADQLVDEYVKQKRK-- gi|218289661|ref|Z ----------KISPKGQITLPAEIRRALNLHEGDRVVFHVSNDGKVFISGLPSYEPENV------------------------------------- gi|160941428|ref|Z -RRKSMQISKKVTKGGGITIPRMLRQETGILPGVPVDVTADAAGIHIVKHVP--ACRFCGAV--EDVAAVCGMEV-CRTCA--------------- gi|52785424|ref|YP --MKAIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDQDKIVLKKYKPHGVCLMTGEITSENREYGNGKITLSPEGAELLLEEIKAALNGVK gi|225018016|ref|Z ---KSTGIVRNTDKVGRIVLPIELRQSLYIDEGDALEIYTEDDKIILKKYNP--TCIFCGSA--DDMDYFKGKFV-CAQCK--------------- gi|75758405|ref|ZP --MKFTGIIQYVDSKGRIGIPRELANILEI-QAVPVDFTVENGLLVLQRH--REACIITGKVSRRNISLANGKIKVHPKEVNQLIEELKEYLEKI- gi|229825503|ref|Z ---------RRLDKLGRITIPANLRKSLNINDSEELEI-IGANNIIIRKQIN--PDIF-GNI--DDDNNYYGNRI-SKKSIIELSK---------- gi|229079536|ref|Z -FMKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYSPTGDISDSNISLANIIVSPNGMEL--------------------- gi|169825686|ref|Y --MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIYTDEGEVILKKYSP---INDLGEFAVETLYETLGTPAFDRDEV--------------- gi|238925496|ref|Y ---------------------------LHIKEGSPLEIYMDADTIVLKKYSQVGSLKNISQAYAQSLSKVTGAMV--------------------- gi|166032206|ref|Z -------LIRTMDSQGRIVIPAEIRKQMKLSDGDALEL-ENVGELLLRKCP--THLNGKEESYLSVLYSVIHCGI--------------------- gi|154503611|ref|Z -----------IDQQGRIIIPAKVRKALQLHTGDVLMLEADT-NICLRKCDSHIPMDIRLDSFLDILHSNVPCRI--------------------- gi|255283584|ref|Z -FMKYADIC-NMDFQGRIVIPAKIRRFLKLTDGEPLQV-ELIDEIHLRKCGSILTDYRRVKSFLTILNNSIRHPV--------------------- gi|150018031|ref|Y --MKASGIVRK-DPLGRIVIPKEIRKVLGINDGDSMEIIKVDNEVVVRKYIK--GCIFCGSD--KGISKFRDALV-CGECKK-------------- gi|170759561|ref|Y ---KYMGSV-KVGPKGQIVIPKEVRDMFDISSGDTLILLADKKGIAIERYEI-------------------------------------------- gi|257793025|ref|Y --RKSVGIVRNLDALNRVILPKSLRDTLGILPHSSVEAFIDGDRIVLRKYAP--GCVFCGQI--DGTSLFRHKPV-CGTCR--------------- gi|150388231|ref|Y --MRRQNNMKTKNKSGGFTIPSDIRREIDMDKGQAVDIEVEAGKLIISKHTP--RCMFCRTI--DGVVRYQNNHV-CSKCIKE------------- gi|150017087|ref|Y ---KSSGIVRKLDPLGRIVIPKEIRKVLEIYEGDSMEIIKVDNGVVVKKYIK--GCIFCGSD--KDVVEFNGAVV-CDGCR--------------- gi|160943683|ref|Z ------GIVRGIDSLGRIVLPKELRTSMHLDTDTKLEIFVDGDAIVLKKHRP--ACDFCGVD--EQAIQFGGYCI-CSACRRKLS----------- gi|258511190|ref|Y ---------RKVDRLGRLVVPNRIRSDLHLAKEDPVEIYVEADSIVLTKYEP--KCVFCGEK--AEKV-FHERAV-CGTCLEELKTRSKR------ gi|163783524|ref|Z ----------KISPRGRITIPKELRDRLGLKAGDYLLIRTEGDKVKLRKIEP--IEKFAGIL--KGAKSY-------------------------- gi|167769200|ref|Z ---------KRMGKRGALTIPQHLRHELGLQGGDAVDLAPGDGGLVIRKHRP--TCNICHGT--CEVVTFKGFQI-CRECFQGIREEVGK------ gi|149180443|ref|Z --LRKSGKGKKVDDSGRLTLPAKYLQQQNWETGSEIGLHIEGEKGTLQEQAP--TCVICGSN--QSLLKVKKTLI-CDDCNQE------------- gi|228930651|ref|Z ---QYLGVTVTISEDGSVKVPLDKLSDIGVKPGDVVEIFSDHDQVYLRKTDT--FCELCKKN--AHLHKLGTLNV-CSDCLTNL------------ gi|167465099|ref|Z ---------RKLDDLGRVVIPKELRRTLGIGEKDALEIYVDGERIVLKKYEP--GCYLCGGI--SDLQTFFDRPI-CLKCITEISNHADKIK---- gi|251798740|ref|Y --MKPAGVVRKVDQLGRIVLPKSLRKRYQMNEGDPVEILVQGDHIILERYRP--RCVFCGSM--EEVKEFKDRYL-CEPCMNE------------- gi|217965742|ref|Y ---------RKIDELGRVVIPIEIRRTMNLNVKDPLEIF-DEDAIILKKYSA--GLV-CDVT--GEFSVENKKFVDSKEGAAELMEEIKRR----- gi|225196630|ref|Z --MTTIREMATMSSKGQVTLPKAIRKALNIDAGSRLAFTLRGNEIVISAED--------------------------------------------- gi|167621631|ref|Y --MPSIEKVATITAKGQTTIPKAVRQALGADYGGKIAYRIDEHGVSLHRVE--------------------------------------------- gi|254429557|ref|Z --MATLEVESTLTDRYQTTVPETVRRALKLNKRDKVHYVIRNGEVVLTRAA--------------------------------------------- gi|37527685|ref|NP --MSDIYELVTLIPKGQITLPWFIRQVLSVDTGSTLVFELRNGEVVVTNVS--------------------------------------------- gi|163747364|ref|Z --MTALQDVSKLTDRYQTTVPAGVRKQLKLGKGDQIRYCTEPGRVYIEPVR--------------------------------------------- gi|83589540|ref|YP --MLDIIKTVKLGARCQMVLPAEIRKQLGIKKGDEIIIKIRGKKAIIEPKP--------------------------------------------- gi|227508793|ref|Z --MNTTSIKAKLTSKNQVTIPKTIREILNISSHDTIDFEVLPNEVRIKNAK--------------------------------------------- gi|115525237|ref|Y --MTAADKPTTVSTKGQVILPKAIRQHRRWSPGTRLVVEDTPDGVLLRQAE--------------------------------------------- gi|227508850|ref|Z ---PIIKSSAKLSKRNQITVPKVVRDVLNVKPTEYLDFEIRSSHITVTKHKE-------------------------------------------- gi|126658908|ref|Z --MTDKGTTTKITDGGRIVIPAEYRRALALNTGDDVILTLEEGTIRILPRT--------------------------------------------- gi|163937910|ref|Y ---PFLGKLVEVGEDGTITIPKFMLEFAGIELPTTVEVLGTLGGVVINQTEH--RCTACSRN--IKTHDWEGTRI-CEDCYTKITT---------- gi|229076649|ref|Z ---PFLGRVVDLGENQTVSIPNDMLEFCGIKEDTKVEVWGLPDGTLNMRIAT--ACDLCNKG--GRVYEIEVSLI-CAEDYVKLTG---------- gi|229162586|ref|Z ---RFLGILTTVSEDGTIKVPLDMLQTAGIKPNAKVELFSDTSNLFIRTAEK--FCDICGTN--TNTTTIGSQEI-CKYCLDRIAQ---------- gi|228969540|ref|Z ---PYMGRIVDVKRTETIQVPADMLDNAGIANDTKVEVWRDMDGTIGFRVLT--KCELCGCG--AKLYELAKRRI-CANDYFKLTG---------- gi|255253276|ref|Z ------GIVRRIDDLGRVVIPKEIRRTLRIKEGDPLEIFTDKEGIILKKYSPIELSDFAQEY--ADSIYQSTKHV-CITDTDNVIA---------- gi|228941042|ref|Z ---PFAGRLVDSERNENVRIPFDMLNNAGLYGTNKVEVWGETDGTIYFRIAT--RCEICKRG--ARLYAFAKKNI-CLECYTSLTG---------- gi|225868850|ref|Y ---DIFMDTAKVMAKGQVTIPKRIRELLNLENGDYVTFVVNKDKVQIQNSKT-------------------------------------------- gi|227873150|ref|Z ---QTFIDNAKVMAKGQVTIPKDIREILGVSCGDRITFVVENGSVRLINSAV-------------------------------------------- gi|32455511|ref|NP ----VTKVSSKITSKNQITIPKTVRELLKVRSTDTIEWQIENGKVMIVRSKP-------------------------------------------- gi|124263145|ref|Y ---PAMSEPTTMSVKGQVTIPRDIRERLGLQAGDKIAWTILSNGTVVVRPK--------------------------------------------- gi|227544815|ref|Z --IKSPTKIFKTGNSSAVRLSKDIMKAAGLKVNDPIDVTVQDGSVVIKPIKE-------------------------------------------- gi|31790970|ref|NP --IKEQTRLAKWGNSKAARIPSQIIKQ--LKLDDNQDMTIENGSIVLTPIKK-------------------------------------------- gi|123441609|ref|Y --MRAQATLQKWGNSVALRLSGNLKTIPNFEVGDTVDIDIEQGLVIQKVVKK-------------------------------------------- gi|87300647|ref|ZP --TPSRQALRRWGNSLGIRLPAAIAREARLQED--QAVELVEGRVLIRPVQP-------------------------------------------- gi|256848829|ref|Z --LQDTTKVFKAGNSLSVRLTKQDLTKFHVEDGTVLEKEYNGKKITFKIV---------------------------------------------- gi|170290304|ref|Y --MVSVGVVVKVDRQGRVILPEDVRKALGIEGEAEMLCRVVGNRIILERFSV---EAISKAF--SELEEIAPSLEFDREEAEEKDKYVDR------ gi|260568997|ref|Z ---------VRVDRYGRIVLPREIREILSIHENSELTLSVREDEIVIGVYR----EDLEKKV--DDLIEFAPKAFVS--EVEEEDKWITR------ gi|124027554|ref|Y -----MAVRVKVDERGRITLPKEIRVALNIMPGDELSVNVVGNKIIIEKS--------MNPF--EKLSRLLGNISFDRHEAEREALRSTR------ gi|240102492|ref|Y --------VVKVSTKGQVVIPKEIRDALGIRNGDYLVVMEKNGYIVMKKLSV---EDVFKEG--EEL---AKTLEITREDV--------------- gi|70607681|ref|YP ---------VKVTRNYQVTIPSSVRNVLGIKEGDILEVYVENDKIVMKKVES---KRPRIKI--EKL----------------------------- gi|254173142|ref|Z --------VTKVTRNYQITIPAEIRKALGIKQGEYLTVELRGDEIVIRKAEV---EWPSI-----DLGR-----DFTPEEIEENTEKMLK------ gi|163763809|ref|Z --EEYTERIRKHQDEHMIKIPSEILAFLHAHQGDEMAFQIVDNQVVIRPSR--------------------------------------------- gi|219398141|ref|Y --QKIERKVTKIGNSLGLTLPQEFYTTLNIKQGDVVSLEIENEQIVIKKSK--------------------------------------------- gi|229823740|ref|Z ---QYRTTLSQWGNSKAVRLPAAILKKLNLLDNQTLLVSVEDNSIRLSPEQ--------------------------------------------- gi|2688952|gb|AAC8 --KMHTTRLKKVGGSVMLTVPPALLNALSLGTDNEVGMVIDNGRLIVEPHR---------------------------------------------