MAFFT

Input

Enter sequences in FASTA format
or upload a local file
 

Options

CLUSTALW output format
Output in alignment order
Gap opening penalty (>0)
 
Offset (>0, works like gap extension penalty)
 
Other advanced options
 
 

Job Options

Job-ID
 (leave empty for automatic creation)
Send notification to (optional)
 

 
Katho, K., Misawa, K., Kuma, K.-i. and Miyata, T. (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucl. Acids Res., 30(14), 3059-3066.