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Alignment
Sequence Analysis
2ary Structure
3ary Structure
Classification
Utils
HHfrag
Modeller
SamCC
bFit
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Four-helical bundle analysis tool
Input
Paste pdb input
Upload a pdb file
Examples
1GCL
paste
/
results
2R2V
paste
/
results
Input parameters (obligatory)
Note:
The helices need to be entered according to their sequential position
in the bundle (it is not relevant whether this done clockwise or counterclockwise,
and whether one starts with the N-terminal helix or any other one), and not in
their order from N- to C-terminus. For helices in anti-parallel orientation, the residue
range should be given with the larger residue number before the smaller one.
Definition for helix 1
first position
chain
from
to
Definition for helix 2
first position
chain
from
to
Definition for helix 3
first position
chain
from
to
Definition for helix 4
first position
chain
from
to
Periodicity
7
11
18
Effective Crick angle
Job Options
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(leave empty for automatic creation)
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Dunin-Horkawicz S, Lupas AN. (2010) Measuring the conformational space of square four-helical bundles with the program samCC.
Journal of Structural Biology.