HHsenser - exhaustive intermediate profile search using HMM-HMM comparison

Search with transition state regulatory protein AbrB or phage lysis protein P5.
or upload a local file
Select input format
Select database
PSI-BLAST E-value threshold
Min. coverage of PSI-BLAST hits
No. of sequences until termination
Match state assignment
(For A2M/A3M format the match assignment of the input is used.)
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Alva V., Nam SZ., Söding J., Lupas AN. (2016) The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis. Nucleic Acids Res. pii: gkw348. [Epub ahead of print] PMID: 27131380
Söding J., Remmert M., Biegert A., Lupas A. HHsenser: exhaustive transitive profile search using HMM-HMM comparison. Nucleic Acids Res. 34(Web Server issue): W374-378. PMID: 16845029