HMMER3

Run HMMER3 with viral DNA ligases.
or upload a local file
Select input format
 
Select databases
Standard
(press CTRL to select/deselect multiple databases)
Proteomes
 
Restriction: Currently this tool page allows the selection of either one database or of one proteome only.
Compute consensus sequence
 (If deselected the first sequence is used as PsiBlast query.)
 
Job-ID
 (leave empty for automatic creation)
Send notification to (optional)
 

 
Alva V., Nam SZ., Söding J., Lupas AN. (2016) The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis. Nucleic Acids Res. pii: gkw348. [Epub ahead of print] PMID: 27131380
Finn RD., Clements J., Eddy SR. (2011) HMMER web server: interactive sequence similarity searching. Nucleic Acids Res. 39(Web Server issue): W29–W37. PMCID: PMC3125773

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