MARCOIL

MARCOIL is a Hidden Markov Model-based program that predicts existence and location of potential coiled-coil domains in protein sequences. The external MARCOIL Homepage can be found here and the external server here
 

Input

Predict coiled-coil regions in Bacillus subtilis flagellin
or upload a local file
 

Options

Matrix
Transition probability
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Job Options

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References (please cite as appropriate)

Alva V., Nam SZ., Söding J., Lupas AN. (2016) The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis. Nucleic Acids Res. pii: gkw348. [Epub ahead of print] PMID: 27131380
Delorenzi M., Speed T. (2002) An HMM model for coiled-coil domains and a comparison with PSSM-based predictions. Bioinformatics 18(4):617-625. PMID: 12016059

Contact

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