REPPER - Detecting regions with short gapless REPeats in protein sequences



Run Analysis with an Adhesin yadA precursor.
or upload a local file
Select alignment format



Input mode
 Use input as given   Run PSI-BLAST  
 Kyte-Doolittle hydrophobicity   Standard Binary   own Scale  
I   W  
V   Y  
L   P  
F   H  
C   E  
M   Q  
A   D  
G   N  
T   K  
S   R  
COILS Parameters
 unweighted   weighted  
 MTIDK matrix   PDB matrix  

Job Options

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References (please cite as appropriate)

Alva V., Nam SZ., Söding J., Lupas AN. (2016) The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis. Nucleic Acids Res. pii: gkw348. [Epub ahead of print] PMID: 27131380
Gruber M., Söding J., Lupas AN. (2005) REPPER -- Repeats and their periodicities in fibrous proteins. Nucl Acids Res 33(Web Server issue): W239-W243. PMCID: PMC1160166


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